Fei Lu. Toolkits Integrated for Genetic and Evolutionary Research (TIGER). (2020).
Java-based code packages and tools developed in the lab to conduct efficient analysis on genetics and evolution.
https://github.com/PlantGeneticsLab/TIGER
Fei Lu. FastCall. (2016).
Super-fast variant caller for whole genome shotgun (WGS) sequencing data. It works for diploid species, including both inbreds and outcrossers.
https://github.com/Fei-Lu/FastCall
Fei Lu, Jeff Glaubitz, Terry Casstevens, Qi Sun, Robert Bukowski, Katie Hyma, Ed Buckler. TASSEL 5.0 Pan-genome Atlas (PanA) pipeline. (2014).
PanA combines genetic mapping and machine learning to produces millions of genetic anchor for the genome of a species.
https://bytebucket.org/tasseladmin/tassel-5-source/wiki/docs/TasselPipelinePanGenomeAtlas.pdf
Fei Lu, Jeff Glaubitz, James Harriman, Terry Casstevens, Rob Elshire. TASSEL 3.0 Universal Network Enabled Analysis Kit (UNEAK) pipeline. (2012).
A reference genome free SNP calling pipeline.
https://bytebucket.org/tasseladmin/tassel-5-source/wiki/docs/TasselPipelineUNEAK.pdf
Java-based code packages and tools developed in the lab to conduct efficient analysis on genetics and evolution.
https://github.com/PlantGeneticsLab/TIGER
Fei Lu. FastCall. (2016).
Super-fast variant caller for whole genome shotgun (WGS) sequencing data. It works for diploid species, including both inbreds and outcrossers.
https://github.com/Fei-Lu/FastCall
Fei Lu, Jeff Glaubitz, Terry Casstevens, Qi Sun, Robert Bukowski, Katie Hyma, Ed Buckler. TASSEL 5.0 Pan-genome Atlas (PanA) pipeline. (2014).
PanA combines genetic mapping and machine learning to produces millions of genetic anchor for the genome of a species.
https://bytebucket.org/tasseladmin/tassel-5-source/wiki/docs/TasselPipelinePanGenomeAtlas.pdf
Fei Lu, Jeff Glaubitz, James Harriman, Terry Casstevens, Rob Elshire. TASSEL 3.0 Universal Network Enabled Analysis Kit (UNEAK) pipeline. (2012).
A reference genome free SNP calling pipeline.
https://bytebucket.org/tasseladmin/tassel-5-source/wiki/docs/TasselPipelineUNEAK.pdf